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Senior Software Engineer at Counsyl (South San Francisco, CA)

We are looking for software engineers to join the Bioinformatics team at Counsyl and help build the analytical pipeline responsible for delivering meaningful health impact to hundreds of thousands of patients a year. The ideal candidate will enjoy working in a collaborative, multidisciplinary R&D environment as we build innovative solutions for bioinformatics software systems.  They will have a scientific curiosity with eagerness to learn and explore new challenges since their work will enable breakthroughs in genomics.


What you'll do



  • Lead, design, and architect major bioinformatics initiatives to expand the capabilities of Counsyl’s bioinformatics ecosystem

  • Author innovative, robust, and high quality software systems

  • Responsible for Counsyl’s core NGS products analytical pipeline from raw sequencing data to patient genotypes

  • Build frameworks and practices to enable continuous integration for science

  • Industry thought leadership with contributions to open source bioinformatics tools

  • Build frameworks and applications to support simultaneously running projects at scale


You are



  • Deep thinker about systems and how systems should work optimally

  • BS/MS/PhD in Computer Science or related computational science (previous genetics experience not required!)

  • 5+ years industry experience with demonstrated project leadership 

  • Proven track record of developing innovative and high performance bioinformatics algorithms and analysis pipelines

  • Full-stack capability; proficient in scientific Python 3 (numpy, scipy, pandas, scikit learn, etc)

  • Fluency with Linux, high-performance computing clusters, shell scripting, databases, and analysis pipelines.  Bonus for background in cloud computing architecture

  • Experience with (or eagerness to learn) modern genetics tools 

  • Previous experience in regulated clinical environment with rigorous design control and software validation a big plus

  • Experience with large scale data science, statistical modeling, and machine learning a plus


by via developer jobs - Stack Overflow
 

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